Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| BLCA | rs150465775 | chr8:50800218 | G/GAT | 2.42E-5 | 216 | 10.33 | 9.07 | 1.87 | KM Plot |
| BLCA | rs150662982 | chr11:65068042 | TTTTG/T | 3.12E-14 | 214 | 9.05 | 13.03 | 2.17 | KM Plot |
| BLCA | rs1633466 | chr11:65016173 | C/G | 0 | 215 | 2.73 | 12.4 | 8.87 | KM Plot |
| BLCA | rs16828638 | chr2:233006343 | A/G | 0 | 216 | 8.78 | 13.07 | 2.07 | KM Plot |
| BLCA | rs16866090 | chr2:225506824 | A/G | 1.79E-10 | 216 | 2.27 | 11.57 | 9.1 | KM Plot |
| BLCA | rs16881465 | chr8:33958354 | C/T | 0 | 216 | 10.12 | 5.77 | 2.07 | KM Plot |
| BLCA | rs16907492 | chr9:121415542 | G/T | 0 | 216 | 2.07 | 13.92 | 9.1 | KM Plot |
| BLCA | rs16911770 | chr9:27756625 | A/G | 0 | 216 | 2.07 | 6.63 | 10.13 | KM Plot |
| BLCA | rs16922598 | chr9:100377140 | A/T | 1.72E-5 | 216 | 10.12 | 6.63 | 5.9 | KM Plot |
| BLCA | rs16929738 | chr11:3840691 | A/G | 5.29E-6 | 216 | 9.47 | 6.6 | 4.07 | KM Plot |
| BLCA | rs16947934 | chr18:5239939 | G/A | 4.41E-5 | 208 | 9.07 | 12.57 | 3.48 | KM Plot |
| BLCA | rs16957752 | chr18:51577484 | C/T | 6.59E-6 | 216 | 10.6 | 6.97 | 4.07 | KM Plot |
| BLCA | rs16965389 | chr18:32114392 | C/T | 3.8E-5 | 216 | 5.6 | 13.03 | 9.43 | KM Plot |
| BLCA | rs16966545 | chr17:26104622 | T/A | 5.08E-9 | 212 | 9.08 | 10.67 | 4.73 | KM Plot |
| BLCA | rs16970854 | chr15:40885627 | A/T | 4.13E-6 | 214 | 10.72 | 6.67 | 6.13 | KM Plot |